PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024972m
Common NameCARUB_v10024972mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 295aa    MW: 33024.5 Da    PI: 6.9763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024972mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857.2e-27110170259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D+y+WrKYGqKe+ +s+fprsY+rCt++   gC+++k+v++ +++p++++itY g H+++
  Carubv10024972m 110 EDKYAWRKYGQKEILNSKFPRSYFRCTHKptqGCKATKQVQKLEKNPEMFQITYVGYHTCT 170
                      7***************************9999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-25101170IPR003657WRKY domain
SuperFamilySSF1182902.35E-24104170IPR003657WRKY domain
SMARTSM007744.0E-36109171IPR003657WRKY domain
PfamPF031069.0E-25110169IPR003657WRKY domain
PROSITE profilePS5081119.761110172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDSNSNNTKS IKRKVVDQLV QGFEFATQLQ LLLSHQQHSN HRLVSGSEMS GITGSWNASC  60
GDDSAAPASC NGGDSGDSKK KRLGVGKGKR GCYTRKKRLH TRVLEARSSE DKYAWRKYGQ  120
KEILNSKFPR SYFRCTHKPT QGCKATKQVQ KLEKNPEMFQ ITYVGYHTCT ASDQTQAKVE  180
PIDHGIIMDS DKPLDATSAQ NHVNAKIQEE DNNISSVTEV SIVKEEEKNN GDLYKDYCEG  240
SSTDGDLSLV WQELMMFDDH HQNQYCFGEV STTSHHHLAF VDNDQFSSFF DSCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17997KKRLGVGKGKRGCYTRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295843.10.0hypothetical protein CARUB_v10024972mg
SwissprotQ93WU81e-153WRK54_ARATH; Probable WRKY transcription factor 54
TrEMBLR0G0N50.0R0G0N5_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0004_23051e-156(Arabidopsis lyrata)
STRINGfgenesh1_pm.C_scaffold_40018181e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113621631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-132WRKY DNA-binding protein 54